Index

A

A (Term attribute) ACTUAL (Term attribute) add() (DataEngineer method) Alias (class in covsirphy.util.alias) all() (Alias method) (DataEngineer method) (GIS method)

append() (ODEScenario method) AREA_ABBR_COLS (Term attribute) AREA_COLUMNS (Term attribute) area_name() (GIS class method) assign() (DataEngineer method) auto_build() (ODEScenario class method) ax (VisualizeBase property)

B

bar_plot() (in module covsirphy.visualization.bar_plot) BarPlot (class in covsirphy.visualization.bar_plot) best_one() (Evaluator class method)

build_with_dynamics() (ODEScenario method) build_with_model() (ODEScenario method) build_with_template() (ODEScenario method)

C

C (Term attribute) choropleth() (DataEngineer method) (GIS method) CI (Term attribute) citations() (DataDownloader method) (DataEngineer method) (GIS method) CITY (Term attribute) clean() (DataEngineer method) COLUMNS (Term attribute) compare_cases() (ODEScenario method) compare_param() (ODEScenario method) compare_plot() (in module covsirphy.visualization.compare_plot) ComparePlot (class in covsirphy.visualization.compare_plot) COUNTRY (Term attribute) covsirphy module covsirphy.downloading module covsirphy.downloading.downloader module covsirphy.dynamics module covsirphy.dynamics.dynamics module covsirphy.dynamics.ode module covsirphy.dynamics.sewirf module covsirphy.dynamics.sir module covsirphy.dynamics.sird module covsirphy.dynamics.sirf module covsirphy.engineering module covsirphy.engineering.engineer module covsirphy.gis module

covsirphy.gis.gis module covsirphy.science module covsirphy.science.ml module covsirphy.science.ode_scenario module covsirphy.util module covsirphy.util.alias module covsirphy.util.config module covsirphy.util.error module covsirphy.util.evaluator module covsirphy.util.filer module covsirphy.util.stopwatch module covsirphy.util.term module covsirphy.util.validator module covsirphy.visualization module covsirphy.visualization.bar_plot module covsirphy.visualization.compare_plot module covsirphy.visualization.line_plot module covsirphy.visualization.scatter_plot module covsirphy.visualization.vbase module csv() (Filer method)

D

DataDownloader (class in covsirphy.downloading.downloader) DataEngineer (class in covsirphy.engineering.engineer) dataframe() (Validator method) DATE (Term attribute) date() (Validator method) DATE_FORMAT (Term attribute) DATE_FORMAT_DESC (Term attribute) definitions() (ODEModel class method) delete() (Alias method) (ODEScenario method) deprecate() (in module covsirphy.util.error) describe() (ODEScenario method)

detect() (Dynamics method) dict() (Validator method) diff() (DataEngineer method) dimensional_parameters() (ODEModel method) (SEWIRFModel method) (SIRDModel method) (SIRFModel method) (SIRModel method) div() (DataEngineer method) download() (DataEngineer method) DSIFR_COLUMNS (Term attribute) Dynamics (class in covsirphy.dynamics.dynamics)

E

E (Term attribute) EmptyError END (Term attribute) estimate() (Dynamics method) estimate_params() (Dynamics method)

estimate_tau() (Dynamics method) evaluate() (Dynamics method) Evaluator (class in covsirphy.util.evaluator) experimental() (in module covsirphy.util.error) ExperimentalWarning

F

F (Term attribute) FIG_COLUMNS (Term attribute) Filer (class in covsirphy.util.filer) files() (Filer method) find() (Alias method) find_args() (in module covsirphy.visualization.vbase) FITTED (Term attribute) float() (Validator method) for_variables() (Alias class method) forecast() (MLEngineer method)

FR (Term attribute) from_data() (Dynamics class method) (ODEModel class method) from_data_with_optimization() (ODEModel class method) (SEWIRFModel class method) from_data_with_quantile() (ODEModel class method) (SEWIRFModel class method) from_json() (ODEScenario class method) from_sample() (Dynamics class method) (ODEModel class method) FUTURE (Term attribute)

G

geojson() (Filer method) get_citation() (in module covsirphy)

get_version() (in module covsirphy) GIS (class in covsirphy.gis.gis)

I

ID (Term attribute) INITIAL (Term attribute) instance() (Validator method) int() (Validator method) inverse_transform() (DataEngineer method) (ODEModel class method) (SEWIRFModel class method) (SIRDModel class method) (SIRModel class method)

ISO3 (Term attribute)

J

jpg() (Filer method)

json() (Filer method)

K

kwargs() (Validator method)

L

layer() (DataDownloader method) (DataEngineer method) (GIS method) LAYERS (DataDownloader attribute) legend() (ScatterPlot method) (VisualizeBase method)

legend_hide() (ScatterPlot method) (VisualizeBase method) line() (BarPlot method) (LinePlot method) line_plot() (in module covsirphy.visualization.line_plot) line_straight() (ScatterPlot method) LinePlot (class in covsirphy.visualization.line_plot)

M

MAIN (Term attribute) metrics() (Evaluator class method) MLEngineer (class in covsirphy.science.ml) model (Dynamics property) model_name (Dynamics property) MODERATE (Term attribute) module covsirphy covsirphy.downloading covsirphy.downloading.downloader covsirphy.dynamics covsirphy.dynamics.dynamics covsirphy.dynamics.ode covsirphy.dynamics.sewirf covsirphy.dynamics.sir covsirphy.dynamics.sird covsirphy.dynamics.sirf covsirphy.engineering covsirphy.engineering.engineer covsirphy.gis covsirphy.gis.gis covsirphy.science covsirphy.science.ml covsirphy.science.ode_scenario covsirphy.util covsirphy.util.alias covsirphy.util.config covsirphy.util.error covsirphy.util.evaluator covsirphy.util.filer covsirphy.util.stopwatch covsirphy.util.term covsirphy.util.validator covsirphy.visualization covsirphy.visualization.bar_plot covsirphy.visualization.compare_plot covsirphy.visualization.line_plot covsirphy.visualization.scatter_plot covsirphy.visualization.vbase

MONO_COLUMNS (Term attribute) mul() (DataEngineer method)

N

N (Term attribute) NA (Term attribute) NAFoundError name (Dynamics property) name() (ODEModel class method) NLOC_COLUMNS (Term attribute)

NotEnoughDataError NotIncludedError NotNoneError NotRegisteredError NotSubclassError num2str() (Term class method)

O

ODE (Term attribute) ODEModel (class in covsirphy.dynamics.ode)

ODEScenario (class in covsirphy.science.ode_scenario) OTHERS (Term attribute)

P

P (Term attribute) PARAM_DICT (Term attribute) parse_days() (Dynamics method) parse_phases() (Dynamics method) PAST (Term attribute) pca() (MLEngineer method) PHASE (Term attribute) plot() (BarPlot method) (ComparePlot method) (LinePlot method) (ScatterPlot method) (VisualizeBase method)

png() (Filer method) predict() (ODEScenario method) PRODUCT (Term attribute) PROVINCE (Term attribute)

R

R (Term attribute) r0() (ODEModel method) (SEWIRFModel method) (SIRDModel method) (SIRFModel method) (SIRModel method) RATE_COLUMNS (Term attribute) recovery_period() (DataEngineer class method)

register() (DataEngineer method) (Dynamics method) (GIS method) rename() (ODEScenario method) represent() (ODEScenario method) RT (Term attribute) RT_FULL (Term attribute) RUNTIME (Term attribute)

S

S (Term attribute) scatter_plot() (in module covsirphy.visualization.scatter_plot) ScatterPlot (class in covsirphy.visualization.scatter_plot) ScenarioNotFoundError score() (Evaluator method) segment() (Dynamics method) SEP (Term attribute) sequence() (Validator method) SERIES (Term attribute) settings() (ODEModel method) SEVERE (Term attribute) SEWIRFModel (class in covsirphy.dynamics.sewirf) show() (StopWatch static method) simulate() (Dynamics method) (ODEScenario method) SIRDModel (class in covsirphy.dynamics.sird) SIRFModel (class in covsirphy.dynamics.sirf) SIRModel (class in covsirphy.dynamics.sir) smaller_is_better() (Evaluator class method) solve() (ODEModel method) sr() (ODEModel class method) (SEWIRFModel class method) (SIRDModel class method) (SIRFModel class method) (SIRModel class method)

START (Term attribute) start_dates() (Dynamics method) STEP_N (Term attribute) stop() (StopWatch method) stop_show() (StopWatch method) StopWatch (class in covsirphy.util.stopwatch) str2num() (Term static method) STR_COLUMNS (Term attribute) sub() (DataEngineer method) SUB_COLUMNS (Term attribute) subclass() (Validator method) subset() (DataEngineer method) (GIS method) subset_alias() (DataEngineer method) SubsetNotFoundError SUFFIX_DICT (Term attribute) summary() (Dynamics method) (ODEScenario method)

T

T (Term attribute) tau (Dynamics property) TAU (Term attribute) tau() (Validator method) TENSE (Term attribute) Term (class in covsirphy.util.term) TESTS (Term attribute) TESTS_DIFF (Term attribute) tick_params() (VisualizeBase method) title (VisualizeBase property) to_dynamics() (ODEScenario method)

to_geopandas() (GIS method) to_json() (ODEScenario method) track() (Dynamics method) (ODEScenario method) transform() (DataEngineer method) (ODEModel class method) (SEWIRFModel class method) (SIRDModel class method) (SIRModel class method) TRIALS (Term attribute) TS (Term attribute)

U

UnExecutedError UnExpectedLengthError UnExpectedNoneError

UnExpectedTypeError UnExpectedValueError UnExpectedValueRangeError update() (Alias method)

V

V (Term attribute) V_FULL (Term attribute) V_ONCE (Term attribute) VAC (Term attribute)

VAC_BOOSTERS (Term attribute) Validator (class in covsirphy.util.validator) VALUE_COLUMNS (Term attribute) variables_alias() (DataEngineer method) VisualizeBase (class in covsirphy.visualization.vbase)

W

W (Term attribute)

X

x_axis() (BarPlot method) (LinePlot method)

Y

Y0_DICT (Term attribute)

y_axis() (BarPlot method) (LinePlot method)