.. covsirphy documentation master file, created by
   sphinx-quickstart on Fri Jun 19 01:07:13 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.
   image:: ./logo/covsirphy_headline.png
   :width: 390px
   :alt: CovsirPhy: COVID-19 analysis with phase-dependent SIRs

.. include:: README.rst

.. toctree::
   :maxdepth: 5
   :caption: Introduction

   README
   markdown/INSTALLATION

.. toctree::
   :maxdepth: 5
   :caption: Tutorial

   01_data_preparation.ipynb
   02_data_engineering.ipynb
   03_ode.ipynb
   04_phase_dependent.ipynb
   05_scenario_analysis.ipynb
   06_prediction.ipynb

.. toctree::
   :maxdepth: 5
   :caption: API references

   covsirphy

.. toctree::
   :maxdepth: 3
   :caption: General

   markdown/TERM
   CODE_OF_CONDUCT
   SECURITY
   CONTRIBUTING


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`